Index

A

add_edge() (ndex2.nice_cx_network.NetworkXFactory method) add_network_attributes_from_nice_cx_network() (ndex2.nice_cx_network.NetworkXFactory method)

add_networks_to_networkset() (ndex2.client.Ndex2 method) add_node() (ndex2.nice_cx_network.NetworkXFactory method)

B

BOOLEAN_DATATYPE (in module ndex2.constants)

C

CARTESIAN_LAYOUT_ASPECT (in module ndex2.constants) convert_value() (ndex2.util.DataConverter method) (ndex2.util.PandasDataConverter method) copy_cartesian_coords_into_graph() (ndex2.nice_cx_network.NetworkXFactory method)

create_networkset() (ndex2.client.Ndex2 method) create_nice_cx_from_file() (in module ndex2) create_nice_cx_from_raw_cx() (in module ndex2) create_nice_cx_from_server() (in module ndex2) create_node() (ndex2.nice_cx_network.NiceCXNetwork method)

D

DataConverter (class in ndex2.util) DefaultNetworkXFactory (class in ndex2.nice_cx_network) delete_network() (ndex2.client.Ndex2 method)

delete_networks_from_networkset() (ndex2.client.Ndex2 method) delete_networkset() (ndex2.client.Ndex2 method) DOUBLE_DATATYPE (in module ndex2.constants)

E

EDGE_ID (in module ndex2.constants) EDGE_INTERACTION (in module ndex2.constants)

EDGE_SOURCE (in module ndex2.constants) EDGE_TARGET (in module ndex2.constants)

G

get_graph() (ndex2.nice_cx_network.DefaultNetworkXFactory method) (ndex2.nice_cx_network.LegacyNetworkXVersionTwoPlusFactory method) get_id_for_user() (ndex2.client.Ndex2 method) get_neighborhood() (ndex2.client.Ndex2 method) get_neighborhood_as_cx_stream() (ndex2.client.Ndex2 method) get_network_as_cx2_stream() (ndex2.client.Ndex2 method) get_network_as_cx_stream() (ndex2.client.Ndex2 method) get_network_aspect_as_cx_stream() (ndex2.client.Ndex2 method) get_network_ids_for_user() (ndex2.client.Ndex2 method) get_network_set() (ndex2.client.Ndex2 method) get_network_summary() (ndex2.client.Ndex2 method) get_networkset() (ndex2.client.Ndex2 method)

get_networksets_for_user_id() (ndex2.client.Ndex2 method) get_node_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) get_node_attribute_value() (ndex2.nice_cx_network.NiceCXNetwork method) get_node_attributes() (ndex2.nice_cx_network.NiceCXNetwork method) get_nodes() (ndex2.nice_cx_network.NiceCXNetwork method) get_sample_network() (ndex2.client.Ndex2 method) get_task_by_id() (ndex2.client.Ndex2 method) get_user_by_id() (ndex2.client.Ndex2 method) get_user_by_username() (ndex2.client.Ndex2 method) get_user_network_summaries() (ndex2.client.Ndex2 method) grant_network_to_user_by_username() (ndex2.client.Ndex2 method) grant_networks_to_group() (ndex2.client.Ndex2 method) grant_networks_to_user() (ndex2.client.Ndex2 method)

I

INTEGER_DATATYPE (in module ndex2.constants)

L

LAYOUT_NODE (in module ndex2.constants) LAYOUT_X (in module ndex2.constants) LAYOUT_Y (in module ndex2.constants) LegacyNetworkXVersionTwoPlusFactory (class in ndex2.nice_cx_network) LIST_OF_BOOLEAN (in module ndex2.constants)

LIST_OF_DOUBLE (in module ndex2.constants) LIST_OF_INTEGER (in module ndex2.constants) LIST_OF_LONG (in module ndex2.constants) LIST_OF_STRING (in module ndex2.constants) LONG_DATATYPE (in module ndex2.constants)

M

make_network_private() (ndex2.client.Ndex2 method)

make_network_public() (ndex2.client.Ndex2 method)

N

Ndex2 (class in ndex2.client) ndex2 (module) ndex2.constants (module) NDExError (class in ndex2.exceptions) NDExInvalidCXError (class in ndex2.exceptions) NDExInvalidParameterError (class in ndex2.exceptions) NDExNotFoundError (class in ndex2.exceptions) NDExUnauthorizedError (class in ndex2.exceptions) NDExUnsupportedCallError (class in ndex2.exceptions) NET_ATTR_NAME (in module ndex2.constants)

NET_ATTR_VALUE (in module ndex2.constants) NetworkXFactory (class in ndex2.nice_cx_network) NiceCXNetwork (class in ndex2.nice_cx_network) NODE_ATTR_DATATYPE (in module ndex2.constants) NODE_ATTR_NAME (in module ndex2.constants) NODE_ATTR_PROPERTYOF (in module ndex2.constants) NODE_ATTR_VALUE (in module ndex2.constants) NODE_ID (in module ndex2.constants) NODE_NAME (in module ndex2.constants) NODE_REPRESENTS (in module ndex2.constants)

P

PandasDataConverter (class in ndex2.util)

S

save_cx2_stream_as_new_network() (ndex2.client.Ndex2 method) save_cx_stream_as_new_network() (ndex2.client.Ndex2 method) save_new_cx2_network() (ndex2.client.Ndex2 method) save_new_network() (ndex2.client.Ndex2 method) search_networks() (ndex2.client.Ndex2 method)

set_network_properties() (ndex2.client.Ndex2 method) set_network_system_properties() (ndex2.client.Ndex2 method) set_node_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) set_read_only() (ndex2.client.Ndex2 method) STRING_DATATYPE (in module ndex2.constants)

U

update_cx2_network() (ndex2.client.Ndex2 method) update_cx_network() (ndex2.client.Ndex2 method)

update_network_group_permission() (ndex2.client.Ndex2 method) update_network_profile() (ndex2.client.Ndex2 method) update_network_user_permission() (ndex2.client.Ndex2 method)

V

VALID_ATTRIBUTE_DATATYPES (in module ndex2.constants)