Index

A

add_edge() (ndex2.nice_cx_network.NiceCXNetwork method) add_networks_to_networkset() (ndex2.client.Ndex2 method)

add_node() (ndex2.nice_cx_network.NiceCXNetwork method) apply_style_from_network() (ndex2.nice_cx_network.NiceCXNetwork method) apply_template() (ndex2.nice_cx_network.NiceCXNetwork method)

C

CARTESIAN_LAYOUT_ASPECT (in module ndex2.constants) create_edge() (ndex2.nice_cx_network.NiceCXNetwork method) create_networkset() (ndex2.client.Ndex2 method) create_nice_cx_from_file() (in module ndex2)

create_nice_cx_from_networkx() (in module ndex2) create_nice_cx_from_pandas() (in module ndex2) create_nice_cx_from_raw_cx() (in module ndex2) create_nice_cx_from_server() (in module ndex2) create_node() (ndex2.nice_cx_network.NiceCXNetwork method)

D

DefaultNetworkXFactory (class in ndex2.nice_cx_network)

delete_network() (ndex2.client.Ndex2 method) delete_networks_from_networkset() (ndex2.client.Ndex2 method)

E

EDGE_ID (in module ndex2.constants) EDGE_INTERACTION (in module ndex2.constants)

EDGE_SOURCE (in module ndex2.constants) EDGE_TARGET (in module ndex2.constants)

G

get_context() (ndex2.nice_cx_network.NiceCXNetwork method) get_edge_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) get_edge_attribute_objects() (ndex2.nice_cx_network.NiceCXNetwork method) get_edge_attribute_value() (ndex2.nice_cx_network.NiceCXNetwork method) get_edge_attributes() (ndex2.nice_cx_network.NiceCXNetwork method) get_edges() (ndex2.nice_cx_network.NiceCXNetwork method) get_graph() (ndex2.nice_cx_network.DefaultNetworkXFactory method) (ndex2.nice_cx_network.LegacyNetworkXVersionTwoPlusFactory method) get_name() (ndex2.nice_cx_network.NiceCXNetwork method) get_neighborhood() (ndex2.client.Ndex2 method) get_neighborhood_as_cx_stream() (ndex2.client.Ndex2 method) get_network_as_cx_stream() (ndex2.client.Ndex2 method) get_network_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) get_network_attribute_names() (ndex2.nice_cx_network.NiceCXNetwork method) get_network_ids_for_user() (ndex2.client.Ndex2 method)

get_network_set() (ndex2.client.Ndex2 method) get_network_summary() (ndex2.client.Ndex2 method) get_node_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) get_node_attribute_objects() (ndex2.nice_cx_network.NiceCXNetwork method) get_node_attribute_value() (ndex2.nice_cx_network.NiceCXNetwork method) get_node_attributes() (ndex2.nice_cx_network.NiceCXNetwork method) get_nodes() (ndex2.nice_cx_network.NiceCXNetwork method) get_opaque_aspect() (ndex2.nice_cx_network.NiceCXNetwork method) get_sample_network() (ndex2.client.Ndex2 method) get_summary() (ndex2.nice_cx_network.NiceCXNetwork method) get_task_by_id() (ndex2.client.Ndex2 method) get_user_by_username() (ndex2.client.Ndex2 method) get_user_network_summaries() (ndex2.client.Ndex2 method) grant_network_to_user_by_username() (ndex2.client.Ndex2 method) grant_networks_to_group() (ndex2.client.Ndex2 method) grant_networks_to_user() (ndex2.client.Ndex2 method)

L

LAYOUT_NODE (in module ndex2.constants) LAYOUT_X (in module ndex2.constants)

LAYOUT_Y (in module ndex2.constants) LegacyNetworkXVersionTwoPlusFactory (class in ndex2.nice_cx_network)

M

make_network_private() (ndex2.client.Ndex2 method)

make_network_public() (ndex2.client.Ndex2 method)

N

Ndex2 (class in ndex2.client) ndex2 (module) ndex2.constants (module) NDExError (class in ndex2.exceptions) NDExInvalidCXError (class in ndex2.exceptions) NDExUnauthorizedError (class in ndex2.exceptions) NET_ATTR_NAME (in module ndex2.constants) NET_ATTR_VALUE (in module ndex2.constants)

NiceCXNetwork (class in ndex2.nice_cx_network), [1], [2], [3], [4], [5], [6], [7] NODE_ATTR_DATATYPE (in module ndex2.constants) NODE_ATTR_NAME (in module ndex2.constants) NODE_ATTR_PROPERTYOF (in module ndex2.constants) NODE_ATTR_VALUE (in module ndex2.constants) NODE_ID (in module ndex2.constants) NODE_NAME (in module ndex2.constants) NODE_REPRESENTS (in module ndex2.constants)

P

print_summary() (ndex2.nice_cx_network.NiceCXNetwork method)

S

save_cx_stream_as_new_network() (ndex2.client.Ndex2 method) save_new_network() (ndex2.client.Ndex2 method) search_networks() (ndex2.client.Ndex2 method) set_context() (ndex2.nice_cx_network.NiceCXNetwork method) set_edge_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) set_name() (ndex2.nice_cx_network.NiceCXNetwork method)

set_network_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) set_network_properties() (ndex2.client.Ndex2 method) set_network_system_properties() (ndex2.client.Ndex2 method) set_node_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) set_opaque_aspect() (ndex2.nice_cx_network.NiceCXNetwork method) set_provenance() (ndex2.nice_cx_network.NiceCXNetwork method) set_read_only() (ndex2.client.Ndex2 method)

T

to_cx() (ndex2.nice_cx_network.NiceCXNetwork method) to_cx_stream() (ndex2.nice_cx_network.NiceCXNetwork method)

to_networkx() (ndex2.nice_cx_network.NiceCXNetwork method) to_pandas_dataframe() (ndex2.nice_cx_network.NiceCXNetwork method)

U

update_cx_network() (ndex2.client.Ndex2 method) update_network_group_permission() (ndex2.client.Ndex2 method) update_network_profile() (ndex2.client.Ndex2 method)

update_network_user_permission() (ndex2.client.Ndex2 method) update_to() (ndex2.nice_cx_network.NiceCXNetwork method) upload_to() (ndex2.nice_cx_network.NiceCXNetwork method)

V

VALID_ATTRIBUTE_DATATYPES (in module ndex2.constants)