Index

A

add_edge() (ndex2.cx2.CX2Network method) (ndex2.nice_cx_network.NetworkXFactory method) add_edge_attribute() (ndex2.cx2.CX2Network method) add_edge_bypass() (ndex2.cx2.CX2Network method) add_network_attribute() (ndex2.cx2.CX2Network method) add_network_attributes_from_nice_cx_network() (ndex2.nice_cx_network.NetworkXFactory method) add_networks_to_networkset() (ndex2.client.Ndex2 method) add_node() (ndex2.cx2.CX2Network method) (ndex2.nice_cx_network.NetworkXFactory method)

add_node_attribute() (ndex2.cx2.CX2Network method) add_node_bypass() (ndex2.cx2.CX2Network method) add_opaque_aspect() (ndex2.cx2.CX2Network method) ASPECT_ID (in module ndex2.constants) ASPECT_VALUES (in module ndex2.constants) ATTR_DATATYPE (in module ndex2.constants) ATTR_NAME (in module ndex2.constants)

B

BOOLEAN_DATATYPE (in module ndex2.constants)

C

CARTESIAN_LAYOUT_ASPECT (in module ndex2.constants) convert_value() (ndex2.util.DataConverter method) (ndex2.util.PandasDataConverter method) copy_cartesian_coords_into_graph() (ndex2.nice_cx_network.NetworkXFactory method) create_from_raw_cx2() (ndex2.cx2.CX2Network method) create_networkset() (ndex2.client.Ndex2 method) create_nice_cx_from_file() (in module ndex2)

create_nice_cx_from_raw_cx() (in module ndex2) create_nice_cx_from_server() (in module ndex2) create_node() (ndex2.nice_cx_network.NiceCXNetwork method) CX2Network (class in ndex2.cx2) CX2NetworkFactory (class in ndex2.cx2) CX2NetworkPandasDataFrameFactory (class in ndex2.cx2) CX2NetworkXFactory (class in ndex2.cx2)

D

DataConverter (class in ndex2.util) DecimalEncoder (class in ndex2.client) default() (ndex2.client.DecimalEncoder method) DefaultNetworkXFactory (class in ndex2.nice_cx_network)

delete_network() (ndex2.client.Ndex2 method) delete_networks_from_networkset() (ndex2.client.Ndex2 method) delete_networkset() (ndex2.client.Ndex2 method) DOUBLE_DATATYPE (in module ndex2.constants)

E

EDGE_ID (in module ndex2.constants) EDGE_INTERACTION (in module ndex2.constants) EDGE_INTERACTION_EXPANDED (in module ndex2.constants)

EDGE_SOURCE (in module ndex2.constants) EDGE_TARGET (in module ndex2.constants) EDGES_ASPECT (in module ndex2.constants)

G

get_alias() (ndex2.cx2.CX2Network method) get_aliases() (ndex2.cx2.CX2Network method) get_attribute_declarations() (ndex2.cx2.CX2Network method) get_cx2network() (ndex2.cx2.CX2NetworkFactory method) (ndex2.cx2.NetworkXToCX2NetworkFactory method) (ndex2.cx2.NoStyleCXToCX2NetworkFactory method) (ndex2.cx2.PandasDataFrameToCX2NetworkFactory method) (ndex2.cx2.RawCX2NetworkFactory method) get_dataframe() (ndex2.cx2.CX2NetworkPandasDataFrameFactory method) get_declared_type() (ndex2.cx2.CX2Network method) get_default_value() (ndex2.cx2.CX2Network method) get_default_values() (ndex2.cx2.CX2Network method) get_edge() (ndex2.cx2.CX2Network method) get_edge_bypasses() (ndex2.cx2.CX2Network method) get_edges() (ndex2.cx2.CX2Network method) get_graph() (ndex2.cx2.CX2NetworkXFactory method) (ndex2.nice_cx_network.DefaultNetworkXFactory method) (ndex2.nice_cx_network.LegacyNetworkXVersionTwoPlusFactory method) get_id_for_user() (ndex2.client.Ndex2 method) get_name() (ndex2.cx2.CX2Network method) get_neighborhood() (ndex2.client.Ndex2 method) get_neighborhood_as_cx_stream() (ndex2.client.Ndex2 method) get_network_as_cx2_stream() (ndex2.client.Ndex2 method) get_network_as_cx_stream() (ndex2.client.Ndex2 method) get_network_aspect_as_cx_stream() (ndex2.client.Ndex2 method)

get_network_attributes() (ndex2.cx2.CX2Network method) get_network_ids_for_user() (ndex2.client.Ndex2 method) get_network_set() (ndex2.client.Ndex2 method) get_network_summary() (ndex2.client.Ndex2 method) get_networkset() (ndex2.client.Ndex2 method) get_networksets_for_user_id() (ndex2.client.Ndex2 method) get_node() (ndex2.cx2.CX2Network method) get_node_attribute() (ndex2.nice_cx_network.NiceCXNetwork method) get_node_attribute_value() (ndex2.nice_cx_network.NiceCXNetwork method) get_node_attributes() (ndex2.nice_cx_network.NiceCXNetwork method) get_node_bypasses() (ndex2.cx2.CX2Network method) get_nodelist_table() (ndex2.cx2.CX2NetworkPandasDataFrameFactory method) get_nodes() (ndex2.cx2.CX2Network method) (ndex2.nice_cx_network.NiceCXNetwork method) get_opaque_aspect() (ndex2.cx2.CX2Network method) get_opaque_aspects() (ndex2.cx2.CX2Network method) get_sample_network() (ndex2.client.Ndex2 method) get_status() (ndex2.cx2.CX2Network method) get_task_by_id() (ndex2.client.Ndex2 method) get_user_by_id() (ndex2.client.Ndex2 method) get_user_by_username() (ndex2.client.Ndex2 method) get_user_network_summaries() (ndex2.client.Ndex2 method) get_visual_properties() (ndex2.cx2.CX2Network method) grant_network_to_user_by_username() (ndex2.client.Ndex2 method) grant_networks_to_group() (ndex2.client.Ndex2 method) grant_networks_to_user() (ndex2.client.Ndex2 method)

I

INTEGER_DATATYPE (in module ndex2.constants)

L

LAYOUT_NODE (in module ndex2.constants) LAYOUT_X (in module ndex2.constants) LAYOUT_Y (in module ndex2.constants) LAYOUT_Z (in module ndex2.constants) LegacyNetworkXVersionTwoPlusFactory (class in ndex2.nice_cx_network) LIST_OF_BOOLEAN (in module ndex2.constants)

LIST_OF_DOUBLE (in module ndex2.constants) LIST_OF_INTEGER (in module ndex2.constants) LIST_OF_LONG (in module ndex2.constants) LIST_OF_STRING (in module ndex2.constants) LONG_DATATYPE (in module ndex2.constants) lookup_node_id_by_name() (ndex2.cx2.CX2Network method)

M

make_network_private() (ndex2.client.Ndex2 method) make_network_public() (ndex2.client.Ndex2 method)

module ndex2 ndex2.constants

N

ndex2 module Ndex2 (class in ndex2.client) ndex2.constants module NDExAlreadyExists (class in ndex2.exceptions) NDExError (class in ndex2.exceptions) NDExInvalidCX2Error (class in ndex2.exceptions) NDExInvalidCXError (class in ndex2.exceptions) NDExInvalidParameterError (class in ndex2.exceptions) NDExNotFoundError (class in ndex2.exceptions) NDExUnauthorizedError (class in ndex2.exceptions) NDExUnsupportedCallError (class in ndex2.exceptions) NET_ATTR_NAME (in module ndex2.constants)

NET_ATTR_VALUE (in module ndex2.constants) NetworkXFactory (class in ndex2.nice_cx_network) NetworkXToCX2NetworkFactory (class in ndex2.cx2) NiceCXNetwork (class in ndex2.nice_cx_network) NODE_ATTR_DATATYPE (in module ndex2.constants) NODE_ATTR_NAME (in module ndex2.constants) NODE_ATTR_PROPERTYOF (in module ndex2.constants) NODE_ATTR_VALUE (in module ndex2.constants) NODE_ID (in module ndex2.constants) NODE_NAME (in module ndex2.constants) NODE_NAME_EXPANDED (in module ndex2.constants) NODE_REPRESENTS (in module ndex2.constants) NODES_ASPECT (in module ndex2.constants) NoStyleCXToCX2NetworkFactory (class in ndex2.cx2)

P

PandasDataConverter (class in ndex2.util)

PandasDataFrameToCX2NetworkFactory (class in ndex2.cx2)

R

RawCX2NetworkFactory (class in ndex2.cx2) remove_edge() (ndex2.cx2.CX2Network method) remove_edge_attribute() (ndex2.cx2.CX2Network method)

remove_network_attribute() (ndex2.cx2.CX2Network method) remove_node() (ndex2.cx2.CX2Network method) remove_node_attribute() (ndex2.cx2.CX2Network method)

S

save_cx2_stream_as_new_network() (ndex2.client.Ndex2 method) save_cx_stream_as_new_network() (ndex2.client.Ndex2 method) save_new_cx2_network() (ndex2.client.Ndex2 method) save_new_network() (ndex2.client.Ndex2 method) search_networks() (ndex2.client.Ndex2 method) set_attribute_declarations() (ndex2.cx2.CX2Network method) set_name() (ndex2.cx2.CX2Network method) set_network_attributes() (ndex2.cx2.CX2Network method) set_network_properties() (ndex2.client.Ndex2 method)

set_network_system_properties() (ndex2.client.Ndex2 method) set_node_attribute() (ndex2.cx2.CX2Network method) (ndex2.nice_cx_network.NiceCXNetwork method) set_opaque_aspect() (ndex2.cx2.CX2Network method) set_opaque_aspects() (ndex2.cx2.CX2Network method) set_read_only() (ndex2.client.Ndex2 method) set_status() (ndex2.cx2.CX2Network method) set_visual_properties() (ndex2.cx2.CX2Network method) STRING_DATATYPE (in module ndex2.constants)

T

to_cx2() (ndex2.cx2.CX2Network method)

U

update_cx2_network() (ndex2.client.Ndex2 method) update_cx_network() (ndex2.client.Ndex2 method) update_edge() (ndex2.cx2.CX2Network method)

update_network_group_permission() (ndex2.client.Ndex2 method) update_network_profile() (ndex2.client.Ndex2 method) update_network_user_permission() (ndex2.client.Ndex2 method) update_node() (ndex2.cx2.CX2Network method)

V

VALID_ATTRIBUTE_DATATYPES (in module ndex2.constants)

W

write_as_raw_cx2() (ndex2.cx2.CX2Network method)